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View Structure Prediction Details

Protein: CE31550
Organism: Caenorhabditis elegans
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE31550.

Description E-value Query
Range
Subject
Range
gi|157768534 - gi|157768534|ref|XP_001676088.1| Hypothetical protein CBG17520 [Caenorhabditis briggsae AF16]
gi|39594901, gi|... - gi|39594901|emb|CAE70769.1| Hypothetical protein CBG17520 [Caenorhabditis briggsae], gi|187025682|em...
339.0 [0..1] [459..1]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVSFGGSD SQFQSLDPAP GYSDDASGYP DIEVIDNEDE MYIDEETYEY LTNHYFRAGH  60
   61 DGCDEYTNLT TFHGMIRVFN SRNCPSLIFW CLVVTTCLVF YIMVCGTMIK TYSTQPSFMR 120
  121 INETKSHRAE NNIELCS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.99
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #2
Region A:
Residues: [138-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKQLTCNEIL KENKQMTCKE VDAYCVSIRF STKTKIRLKK KGLYFKHGTE EDVHYLSSKP  60
   61 HTHHMIRLKL IQIDRLNLGR APCTTNWREI TWIEKDSIPD YRYSLNMCEN IRFELTRKVE 120
  121 YLQYDFPCYP SCSEIKYQVS KSKLRHSSDS VVITFSVLPT ITLMQETRKT TLIDILCYLG 180
  181 GASSLFMGCS CVTLMEMFVF LFKLVAKSAC SQEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #3
Region A:
Residues: [352-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPDDSFYND KIEFEYSDHR NKRRYAIFDR ETMEKYLISN NSIDVKSINL DKRLSVFSVK  60
   61 KAPKLRALKD NRNFDKIDIF DEGISE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [438-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDAKNEVALS QKDECSVEYQ DEKMDTLGEI PLENRRPLRP QLRRCSTATS FASHTSKGSS  60
   61 SLTVRSYAPN QQKRRMSKAF TKNMPMNDF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle