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View Structure Prediction Details

Protein: mig-17
Organism: Caenorhabditis elegans
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mig-17.

Description E-value Query
Range
Subject
Range
VM3VA_MACLB - Zinc metalloproteinase-disintegrin-like VLAIP-A OS=Macrovipera lebetina PE=1 SV=1
294.0 [0..1] [509..28]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTFCILIPT FLVLVWTTES ARREKQQSND ISFVKRKVQD GLKFSRVIKY TNETIQGMKT  60
   61 NFNSNKTQEL SLDVLVVADF LSYQAFLEMS NGDSHRAIHN LKEYLHALFE QTKIIYDGIS 120
  121 FGNETLHMVF AGTWIATQER DCPLWISWAE EEEERVLNEE IRRL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [165-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEKERDLNST FVDDTFFMNS TDSDNSSTDA LISSDMPKKL RKFVDITLEE MQENNSTEMT  60
   61 LKIDSKKAID KFTIWLKEQT GLPRHEHAVL ITKFDLISIN GNSATQGMAY VGNICENGDS 120
  121 SSVVEDIGAG LTSLIMAHEI GHSLGALHDG AYETAECDSN DNYLMAVAVS GSADRQSFLN 180
  181 SRRMSNCSIN SIIENLKEPT ANCVKKWKTK KGKDVSQKDF IKKPGELVKI TRQCQVAFGP 240
  241 TFIPCLHIGY FHEQSICERI WCSDGESDEC QTLNYFPAFD GTECGYNMWC LEGSCVQNTK 300
  301 KWMDCKDINS KTCSKYSTSK LKHYCKSKDF REICCRTCAK KGKIY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 2eroA
Description: No description for 2eroA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle