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View Structure Prediction Details

Protein: CE30937
Organism: Caenorhabditis elegans
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30937.

Description E-value Query
Range
Subject
Range
CE39144 - status:Confirmed UniProt:Q3HKC4 protein_id:ABA54423.1
308.0 [0..9] [362..1]

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Predicted Domain #1
Region A:
Residues: [1-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIHKQEKMP QRKRTMDSPQ EEDVEVKKKA TEVEYVVRSL ASDEPAPFSD EALAITTREA  60
   61 VDYSKKITLA MAEANEAGRP VRIYADGIYD LFHHGHANQL RQVKKMFPNV YLIVGVCGDR 120
  121 DTHKYKGRTV TSEEERYDGV RHCRYVDEVY REAPWFCTVE FLKNLKVDFI AHDAIPYVAP 180
  181 GEEDLYEKFR REGMFLETER TEGVSTSDVV CRIIRDYDKY VRRNLQR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.09691
Match: 1cozA
Description: CTP:glycerol-3-phosphate cytidylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.341914580073 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.290102533976514 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.290102533976514 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.279236768577427 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [228-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYSPKELNVG FLAASKYQIQ NKVDSLKSKG IELLSTWKSK SDDIIRDFID TFHKDGGLNA  60
   61 FGGRLKGIMS MSRSPSPSPH EGSPTGIEHH LETQDEEEEE EALEEEKVVE QKIVEKKEVV 120
  121 KKRSSRNKAK TPLEY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle