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View Structure Prediction Details

Protein: eff-1
Organism: Caenorhabditis elegans
Length: 596 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eff-1.

Description E-value Query
Range
Subject
Range
eff-1 - status:Confirmed UniProt:Q18215 protein_id:CAA91123.1
1123.0 [0..1] [586..1]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPFEWSPQ FILLLLAVTT YGFPLEEKFD GLFRAEPPHC SKTPIVRAQT SQNAMSSIAR  60
   61 GMQMQFSIGL HTAVCFRLYE DTQLASQEIN DDENAGNQTS LLHTIRLEKL EHHHPITQRY 120
  121 TFGIPEVHAS CICECDAT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [139-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTCTAESHQ FTACPESDKS DETSSCYRTF FPNQTPIGCS EDDIPKLCCD VRFKPYKNMT  60
   61 FLAVKLEQPT TYATFVYAAY DFV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [222-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGYWVEKDKT KIRSQLDGGT QDRHLDQKRR ISLAVTAGGR ASHQLETGMY FSRTSNGGET  60
   61 EELRMQPLNE ITDNNFDRLG WYRMDDSGHF HVNNGVVKMD DIHKAKVKNC KEQTYKSILS 120
  121 ANHYMPGHFN LTRPLEVIKP WIQSARIFDS SLRQAVVTHA EGTNLQISIH LDDEVE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [398-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQNLVFFHNA SRIRDFSGSI IVDSKSNRLF NLTVYEASGK IDGSVKMSTG FGSDTIHTFT  60
   61 AYVSDLHASN RSMIIPLPAI VGQGARAICL RADSMADIDK ICHVIEYFES PLEIDLVEGK 120
  121 WHEMIGTCPT CNQINFNGMM KFLNPAHWIK GISSIGDGVM IATDIVVYLG VLCILYLLIT 180
  181 KIIVPLGQIC LRIRRWCKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle