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View Structure Prediction Details

Protein: inx-18
Organism: Caenorhabditis elegans
Length: 412 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-18.

Description E-value Query
Range
Subject
Range
inx-18 - status:Partially_confirmed UniProt:Q8MXG9 protein_id:AAM81118.1
463.0 [0..1] [409..1]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGFRIGMH FLASALRFLE PRVDDDFVDR LHYLYTSTMV LMFAVLVSAK QYVGHPIECF  60
   61 VPAQFTRAME QYTENYCWVQ NTYWVPFQDL IPHRLDDRER RQIGYYQWVP FVLAVAALTF 120
  121 HIPSSVWRML 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGQSGLNAGL VLQLVCGDEN VDPVVRDKTV DIVARHIDDA LMYQRDHGAR RHSVYIFAIF  60
   61 KLGKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [196-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGAYVSSVYI FIKALHLANV ILQFMLLNSF LQTSDYPMFG AHVLYDLFMG REWRDSGKFP  60
   61 RVTLCDFEIR VLGNVHRHTV QCVLVI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [282-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMLTEKIFIF LWLWLTVLAI VTALNLIFWF IALVSNSCRE HFVSKHLDIQ SDQISRFVHR  60
   61 FLRADGVFLL QMIASHSGNL MAAKVTEQLW MIFVRRSGKP VIEDKIEDRG SVRSTNGNDW 120
  121 ESVGELSIVD C

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle