| Protein: | twk-13 |
| Organism: | Caenorhabditis elegans |
| Length: | 567 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for twk-13.
| Description | E-value | Query Range |
Subject Range |
|
|
237.0 | [0..16] | [567..75] |
|
Region A: Residues: [1-243] |
1 11 21 31 41 51
| | | | | |
1 MFARAKFAHH IYRRAERLNL YLDKEEGEIE NLEEEIDETT EKKWWLRTKR WFRLALPHFG 60
61 LVLLSIGYTL IGALCFHHYE KPYEQQLRNE TSRRIGELKN RVMDQLWRMS NNGTAYSTWR 120
121 QTANDGMDEL IRDVFWDYTR NYMTPDDVIY GDGPIKWSFM SSIFFSWTAI TTIGYGHIVP 180
181 RTDEGRVAII FYALLGIPLI LVTIADIGRF LATYIIKLHH GYMAVMSFVT NSCLKCIKWA 240
241 CCW
|
| Detection Method: |  |
| Confidence: | 30.221849 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [244-312] |
1 11 21 31 41 51
| | | | | |
1 IRLPRRHIPM PTLELLQRTQ KLYPNNNNPT VAATAASAGG GTGRRKKQQR DNVSDAGTFD 60
61 NISEINDGS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [313-567] |
1 11 21 31 41 51
| | | | | |
1 EGGENENEGE EEEQIQFDPS NHEKRVSVLF ILLIMLGYVA GGAYIVRWWE EWTFFEAFYF 60
61 CFVTVTTIGF GDIVPANVDW LPATLAYIVF GLIITTMCID LVGSEYIRDI HFYGRSLGRQ 120
121 FMTIGGKVVH LGEVFGYVAF LQKNYGLTAE QLTKLSQLPE EYLLDCLING RQPDLNWIGG 180
181 RPYVPPDIYY FKWIEHPRTL SFASDRVLQS MESLDLNTSR CSTARTLTPR EYYQKILFQY 240
241 CKQLQPEEPI ADIDN
|
| Detection Method: | |
| Confidence: | 18.69897 |
| Match: | 1lnqA |
| Description: | Potassium channel-related protein MthK |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 1.26736023026862 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.68812524232244 | bayes_pls_golite062009 |
