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View Structure Prediction Details

Protein: acl-14
Organism: Caenorhabditis elegans
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-14.

Description E-value Query
Range
Subject
Range
gi|157764542 - gi|157764542|ref|XP_001674614.1| Hypothetical protein CBG19251 [Caenorhabditis briggsae AF16]
gi|39594575, gi|... - gi|39594575|emb|CAE72153.1| Hypothetical protein CBG19251 [Caenorhabditis briggsae], gi|187024492|em...
275.0 [0..1] [415..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDEQTQKLL DLANGQRPPG SRLVIEQGSF ASRLWWLVKA PFRTLMCLSL VTIFFATYFG  60
   61 FMLPVMWART VWPRLYWFVE GKLYRWLQSF IAYWGYT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGYDVYEYGD DVTTYYRDER VLMMCNHQST ADVPTLMTVL QNKGVASRKT LWLMDVMFRW  60
   61 TPFGIIGNNH GDYFIQQGKA TRDKELIRLK KHLHDVFWDR DRRWVILFPE GGFYYKRVES 120
  121 SQSYGKKNGF PHLLYTTLPR MGAVQAILEE VGPRTEDSDE PRERSNSKLK LLQDTVGAIR 180
  181 EKKYVKDTRP PIKYVLDVTI AYPNGI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [304-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLSLATFGLG TREKCDIAVN YKIYDAAEVP FEDEEKLRDW MYEVYKEKDE MLARYYSTGE  60
   61 FNPGEKGTRI AFSWAKIIGM YGFWFGSFYA QYNVYSYLIT SIAKFLLFPF SS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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