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View Structure Prediction Details

Protein: acl-14
Organism: Caenorhabditis elegans
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-14.

Description E-value Query
Range
Subject
Range
gi|157764542 - gi|157764542|ref|XP_001674614.1| Hypothetical protein CBG19251 [Caenorhabditis briggsae AF16]
gi|39594575, gi|... - gi|39594575|emb|CAE72153.1| Hypothetical protein CBG19251 [Caenorhabditis briggsae], gi|187024492|em...
275.0 [0..1] [415..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDEQTQKLL DLANGQRPPG SRLVIEQGSF ASRLWWLVKA PFRTLMCLSL VTIFFATYFG  60
   61 FMLPVMWART VWPRLYWFVE GKLYRWLQSF IAYWGYT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGYDVYEYGD DVTTYYRDER VLMMCNHQST ADVPTLMTVL QNKGVASRKT LWLMDVMFRW  60
   61 TPFGIIGNNH GDYFIQQGKA TRDKELIRLK KHLHDVFWDR DRRWVILFPE GGFYYKRVES 120
  121 SQSYGKKNGF PHLLYTTLPR MGAVQAILEE VGPRTEDSDE PRERSNSKLK LLQDTVGAIR 180
  181 EKKYVKDTRP PIKYVLDVTI AYPNGI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [304-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLSLATFGLG TREKCDIAVN YKIYDAAEVP FEDEEKLRDW MYEVYKEKDE MLARYYSTGE  60
   61 FNPGEKGTRI AFSWAKIIGM YGFWFGSFYA QYNVYSYLIT SIAKFLLFPF SS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle