| Protein: | let-413 |
| Organism: | Caenorhabditis elegans |
| Length: | 679 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for let-413.
| Description | E-value | Query Range |
Subject Range |
|
|
416.0 | [0..4] | [481..30] |
|
Region A: Residues: [1-387] |
1 11 21 31 41 51
| | | | | |
1 MPAFFCLPMA CQRQVDSIDR SQSNLQAIPS DIFRFRKLED LNLTMNNIKE LDHRLFSLRH 60
61 LRILDVSDNE LAVLPAEIGN LTQLIELNLN RNSIAKLPDT MQNCKLLTTL NLSSNPFTRL 120
121 PETICECSSI TILSLNETSL TLLPSNIGSL TNLRVLEARD NLLRTIPLSI VELRKLEELD 180
181 LGQNELEALP AEIGKLTSLR EFYVDINSLT SLPDSISGCR MLDQLDVSEN QIIRLPENLG 240
241 RMPNLTDLNI SINEIIELPS SFGELKRLQM LKADRNSLHN LTSEIGKCQS LTELYLGQNF 300
301 LTDLPDTIGD LRQLTTLNVD CNNLSDIPDT IGNCKSLTVL SLRQNILTEL PMTIGKCENL 360
361 TVLDVASNKL PHLPFTVKVL YKLQALW
|
| Detection Method: |  |
| Confidence: | 46.0 |
| Match: | 2omuA |
| Description: | No description for 2omuA was found. |
| Term | Confidence | Notes |
| signal transducer activity | 2.54176035045352 | bayes_pls_golite062009 |
| molecular transducer activity | 2.54176035045352 | bayes_pls_golite062009 |
| receptor activity | 2.44108148686445 | bayes_pls_golite062009 |
| transmembrane receptor activity | 2.25077658159974 | bayes_pls_golite062009 |
| protein kinase activity | 1.61450095469422 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 1.37462680876315 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.36168522830563 | bayes_pls_golite062009 |
| kinase activity | 1.28067810202729 | bayes_pls_golite062009 |
| binding | 1.23313855731605 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.875083054478353 | bayes_pls_golite062009 |
| protein binding | 0.646159692466759 | bayes_pls_golite062009 |
| transferase activity | 0.435331931559158 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 0.231213253402712 | bayes_pls_golite062009 |
| nucleic acid binding | 0.205944109094333 | bayes_pls_golite062009 |
|
Region A: Residues: [388-507] |
1 11 21 31 41 51
| | | | | |
1 LSENQTQSIL KLSETRDDRK GIKVVTCYLL PQVDAIDGEG RSGSAQHNTD RGAFLGGPKV 60
61 HFHDQADTTF EENKEAEIHL GNFERHNTPH PKTPKHKKGS IDGHMLPHEI DQPRQLSLVS 120
121
|
| Detection Method: | |
| Confidence: | 36.69897 |
| Match: | 2id5A |
| Description: | No description for 2id5A was found. |
|
Region A: Residues: [508-565] |
1 11 21 31 41 51
| | | | | |
1 NHRTSTSSFG ESSNSINRDL ADIRFIDAPA SAQNGVREAT LSPEREERMA TSLSSLSN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [566-679] |
1 11 21 31 41 51
| | | | | |
1 LAAGTQNMHT IRIQKDDTGK LGLSFAGGTS NDPAPNSNGD SGLFVTKVTP GSAAYRCGLR 60
61 EGDKLIRAND VNMINASQDN AMEAIKKRET VELVVLRRSP SPVSRTSVSR PCEY
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1iu0A |
| Description: | Synaptic protein PSD-95 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.6196222853442 | bayes_pls_golite062009 |
| protein binding | 2.35875654816667 | bayes_pls_golite062009 |
| kinase activity | 1.29833697558449 | bayes_pls_golite062009 |
| transporter activity | 1.18978519116375 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.11584635608743 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.07211582292329 | bayes_pls_golite062009 |
| signal transducer activity | 1.06018756723145 | bayes_pls_golite062009 |
| molecular transducer activity | 1.06018756723145 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.851396699088923 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.755223974149211 | bayes_pls_golite062009 |
| PDZ domain binding | 0.71844819286977 | bayes_pls_golite062009 |
| protein domain specific binding | 0.64214865642772 | bayes_pls_golite062009 |
| protein kinase binding | 0.54934142458843 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.549085929250683 | bayes_pls_golite062009 |
| kinase binding | 0.541050170070789 | bayes_pls_golite062009 |
| receptor binding | 0.359972518335054 | bayes_pls_golite062009 |
| transferase activity | 0.325404241870749 | bayes_pls_golite062009 |
| beta-catenin binding | 0.27594880120163 | bayes_pls_golite062009 |
| enzyme binding | 0.265928259068924 | bayes_pls_golite062009 |
| actin binding | 0.263747574646927 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.252733105474942 | bayes_pls_golite062009 |
| phosphatase binding | 0.24515474358339 | bayes_pls_golite062009 |
