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View Structure Prediction Details

Protein: CE30649
Organism: Caenorhabditis elegans
Length: 550 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30649.

Description E-value Query
Range
Subject
Range
gi|29468498 - gi|29468498|gb|AAO85554.1| 3-hydroxy-3-methylglutaryl-CoA reductase [Nicotiana attenuata]
664.0 [0..8] [510..106]

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Predicted Domain #1
Region A:
Residues: [1-550]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVADKRKLLD FLQSCDISDE ASRKIENFIC ENYDQKEKPK RKPLFSVGED DDSEEYVSPI  60
   61 KETCETGTQC KRDVEYPEIE SGNRSLDEIS REWKECKDVT PGEAVRLLRR GQAKSRELES 120
  121 RFPAEQAIPI RRTFINKKFE NLPYLGYDYT LATECCCENV IGYTPVPVGV AGPLTLNGTS 180
  181 EIYVPMATTE GALIASTNRG MNVIRAAGGV ETSIFNSGMT RAPVVKFPTA RDAVSMKRWL 240
  241 EHPENQDRAR QEFQSCSRFA KLKSIDITID GNLAYLRFDA HTGDAMGMNM ISKSCDSTMR 300
  301 FLMENFPEMT VLALSGNLCV DKKAAAKNWT EGRGRSVVAE CLIPREVVTK TLRTTPEQLA 360
  361 YLTTTKLHIG SSRAGAVGGS NAHAANIVAA IFIATGQDAA QVVSSSMCST RMEVTADKNL 420
  421 YVSCTLPCVE VGTVGGGTIL APQRACLESL GCAGPNKEQP GQNAERLAEV IAATVLAGEL 480
  481 SLMAALTTNE LVSSHMKLNR SKQQLYADDS GKATHFEKEV EKAGSLLSGK SGNIKLKRLP 540
  541 QDVVQCSNIL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 175.0
Match: 1dq8A
Description: NAD-binding domain of HMG-CoA reductase; Substrate-binding domain of HMG-CoA reductase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle