YRC Public Data Repository - Protein Structure Prediction

Protein:	CE29722
Organism:	Caenorhabditis elegans
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29722.

Description	E-value	Query Range	Subject Range
gi\|255652101 - gi\|255652101\|ref\|ZP_05399003.1\| tRNA-dihydrouridine synthase [Clostridium difficile QCD-37x79] gi\|145952352, gi... - gi\|90572713\|ref\|ZP_01229237.1\| hypothetical protein CdifQ_02003914 [Clostridium difficile QCD-32g58]... gi\|255102766 - gi\|255102766\|ref\|ZP_05331743.1\| tRNA-dihydrouridine synthase [Clostridium difficile QCD-63q42] gi\|255308587 - gi\|255308587\|ref\|ZP_05352758.1\| tRNA-dihydrouridine synthase [Clostridium difficile ATCC 43255] gi\|255316261 - gi\|255316261\|ref\|ZP_05357844.1\| tRNA-dihydrouridine synthase [Clostridium difficile QCD-76w55] gi\|255518922 - gi\|255518922\|ref\|ZP_05386598.1\| tRNA-dihydrouridine synthase [Clostridium difficile QCD-97b34] gi\|254977180 - gi\|254977180\|ref\|ZP_05273652.1\| tRNA-dihydrouridine synthase [Clostridium difficile QCD-66c26] gi\|255094510 - gi\|255094510\|ref\|ZP_05323988.1\| tRNA-dihydrouridine synthase [Clostridium difficile CIP 107932] gi\|115252617, gi... - gi\|126701180\|ref\|YP_001090077.1\| tRNA-dihydrouridine synthase [Clostridium difficile 630], gi\|115252...	269.0	[0..1]	[283..17]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRYSKLAFR QLVRVYDVDV CFTPMIYAKN FIESEKCRSS ELSVCEGDSP LIVQFATDDP  60
   61 FVLSEAAEMV YKCSTGVDLN CGCPKHDVRS KGFGSALLSK PELLADMVRQ TRARIPDPDF 120
  121 SVSLKIRINH DIEKTVDLCR KAEAAGVTHL TVHGRTPSQR AEPIDIQALR IVKDSVSVPI 180
  181 IANGGITTRE EALFLAEQTG VDGIMAANGL LDNPALFAGH EHTPSDCVEN FMRLSREYGL 240
  241 DWLLYHQHLQ YMLRPVFSAQ QRRVFNELNG RLAIDHFLNN LLDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1vhnA
Description:	Crystal structure of a putative flavin oxidoreductase with flavin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.94749091175302	bayes_pls_golite062009
tRNA dihydrouridine synthase activity	1.94490879164338	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: