| Protein: | CE29708 |
| Organism: | Caenorhabditis elegans |
| Length: | 778 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29708.
| Description | E-value | Query Range |
Subject Range |
|
|
473.0 | [0..2] | [777..240] |
|
Region A: Residues: [1-317] |
1 11 21 31 41 51
| | | | | |
1 MGFASASREE KLKMLKTNKT RKTTKHLNRL AKRKKLSREI RDGMADIKSR KSADLRQRAV 60
61 NIEDDFIADR QAHYENSDED LPLDMMDADI DWENSAFANA KRRLEKKRSG VESDSDDEDD 120
121 VEKKKRKFAG LLEEGHEELL PIKLKDGTLI RPTREKEVKE DEEEKSGDEE EEGEEDEPHR 180
181 EDFSHLSASE LIAKRRELMQ EFKDTIASHA NMLLSNPQVN IVRLRDLYNL CNGEKIHSLV 240
241 RESVQKLAIA STLQVLLDIL PGYAIREQTA EEKAQKQKKE TRNLVNYEES LLRYHLKYLQ 300
301 LCEKLSNKLV GKDRHND
|
| Detection Method: |  |
| Confidence: | 13.221849 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [318-778] |
1 11 21 31 41 51
| | | | | |
1 ESTFTFKMGI LSVKALARIV VSAPHFNYST NIVSSLVRLS LAKNETVIRE VCEAIRTVFK 60
61 EDIHLKITLF TARSISTLVT KRKGRVPPEL LRTLLSMNIT EVKDEDKKSG KDALIAKKYQ 120
121 IKKEKASKTA KKYKKQLARL EADLLEVEAE ESMSKKLKNA TEAMKFAFQS YFSILKRMPN 180
181 SALLEPVLEG LSKFAHLLSI EFYEDIVSTM ENMVQNENLK SLDQLHCINT VFVILSGDGQ 240
241 LLNIDPSKFY RLAYRVLNHL PFEKRPEQRK NQIIMAAKTL ETMLVIRRKA VPLSRVAAFV 300
301 KRLLSIATVL DDFPALCIVS LVRSLFIAHP KLSSMIEDEE GGAPGIYRPD IDDPDVANAL 360
361 ASDVRDELSM LARRRNTELS RFANNILYGV PSTGIFKLNP QLSSLKPWIL MGQLMDNAKD 420
421 AYDKVESKYL DDLEKAAKKR NQSVTPKNIN FHISNWLAAS K
|
| Detection Method: | |
| Confidence: | 0.977 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.4227425773296 | bayes_pls_golite062009 |
| protein binding | 0.79300810988911 | bayes_pls_golite062009 |
