YRC Public Data Repository - Protein Structure Prediction

Protein:	CE30625
Organism:	Caenorhabditis elegans
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE30625.

Description	E-value	Query Range	Subject Range
gi\|159130492 - gi\|159130492\|gb\|EDP55605.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70990326, gi\|... - gi\|70990326\|ref\|XP_750012.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668476...	124.0	[0..12]	[98..74]
gi\|76639958 - gi\|76639958\|ref\|XP_870510.1\| PREDICTED: similar to UPF0287 protein DC13 [Bos taurus]	122.0	[0..1]	[74..230]
gi\|50795800 - gi\|50795800\|ref\|XP_423810.1\| PREDICTED: similar to RIKEN cDNA 1110046L09 [Gallus gallus]	120.0	[0..1]	[75..176]
gi\|114663888 - gi\|114663888\|ref\|XP_511125.2\| PREDICTED: similar to DC13 [Pan troglodytes]	105.0	[0..1]	[51..313]
gi\|123979754, gi... - gi\|123994527\|gb\|ABM84865.1\| chromosome 16 open reading frame 61 [synthetic construct], gi\|123979754\|... C16orf61 - chromosome 16 open reading frame 61	102.0	[0..1]	[75..1]
COXM2_MOUSE - COX assembly mitochondrial protein 2 homolog OS=Mus musculus GN=Cmc2 PE=3 SV=1	100.0	[0..1]	[73..1]
gi\|114193576, gi... - gi\|115396736\|ref\|XP_001214007.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	97.0	[0..1]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPDLSPHLH TKECNMLIEF LQRCHSEKPI GKMIGKCSYW DEAVWQCTKK ERIWRRDNNP  60
   61 AYKRRIVELR SLPEKYWTPA LHKLKEDGVL IGGADQSQGC KI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.229148
Match:	PF08583.1
Description:	No description for PF08583.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits