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View Structure Prediction Details

Protein: stam-1
Organism: Caenorhabditis elegans
Length: 457 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stam-1.

Description E-value Query
Range
Subject
Range
STAM - signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
266.0 [0..7] [453..4]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQKSFPMS AYEDLLGKIT APTITVENWE GILAFCDMIN NDFEGSKTGI KSLRKRLNNR  60
   61 DPHVVLLAIS VLDSCWAN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.09691
Match: 1dvpA
Description: Hrs
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [79-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CEERFRKEVS SAQFINELKA LCTSSQRQVA EKMRLTVQKW VDTECKTEQS LSLIVTLHKN  60
   61 LVADGYSFVV DDPKSKTKAI DAKFANDPNY VGSAQEEEAI AKAIAASLAD AEKQEKAKKS 120
  121 TSTMYPSAKA SSPAVQTNSN IPEKNVRALY DFEAAESNEL SFVAGDIITI TDESNPHWWT 180
  181 GRIGTQQGLF PSSFVTNQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.30103
Match: 2dybA
Description: No description for 2dybA was found.

Predicted Domain #3
Region A:
Residues: [277-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDDLKSKETD SSQKAPEVVA SINEAILVRC LQVLHECDPT GERQDPEDLA QLEAASYAQG  60
   61 NLIDAHLASI DRQSNSLAQI DVAIRDVLAL YDDAIQKGGF QHQSQGMYQQ PMQQYNYQQP 120
  121 PNRAYYPPTG PVQQQQPQQY PPQHYPAPGA QPQYACPPNS VPQPQQQQQQ WPAPSSQPQQ 180
  181 Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.09691
Match: 2pz1A
Description: No description for 2pz1A was found.

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