YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: tbc-7
Organism: Caenorhabditis elegans
Length: 696 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tbc-7.

Description E-value Query
Range
Subject
Range
gi|157769711 - gi|157769711|ref|XP_001676676.1| Hypothetical protein CBG14616 [Caenorhabditis briggsae AF16]
gi|39598006, gi|... - gi|39598006|emb|CAE68698.1| Hypothetical protein CBG14616 [Caenorhabditis briggsae], gi|187028011|em...
356.0 [0..1] [696..1]

Back

Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQAGADMSD TSGDEDETVP ARVGQAAGRT DDSEVDNDEG NNFFRFQRAA PVYPKNMINH  60
   61 NLDGAATTGM RRTTSSIARI SMAIRRSLRL PRRAETRMAA REEQVLVEPI ASVVLFPLLK 120
  121 RERAQFVNRW NKGFTFWSIE LHQNFAVEVA GFTRASVFVM TENAGSSPEG PL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [173-508]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTENTRDTRI GESSVPNLLQ EIVDNKRLNR YEKVKKIIRR TDWPVCHEIR ANLWKELCNT  60
   61 KDWSGSKRLY SDEAIEYDRI NQGKKQSPQI LADEGGVLSN FDLKEVGSVK LIRLLLIIER 120
  121 LRPEIVYAPS IYPLCSLLLH FNDDDGDCFA CINYLLNTKG YLMTAPVQWA ASSHTILALV 180
  181 KKHKSAAYVL LKRRLGTTDD SVLVKCIEDW LLWLFQYLPL PYICRIVDCY FAEGHKFLIR 240
  241 SAISIVYIWS KVHKRGMEDF RGKSLQEKID SIKKEFQDVA TNISVSTSTF IATAVKIRNL 300
  301 QSATIAKLQA QFEDELRDEV TSRPRQIKKV RRTIFC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 2qq8A
Description: No description for 2qq8A was found.

Predicted Domain #3
Region A:
Residues: [509-696]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAFKSCLVDN DSAVELMSYM PPRLQLVTPT LAYQLSQDGT SFYNFWSKVD PLDQTIIIIK  60
   61 STCGAIFGAY CSSTWSERHD RKERTRSKYW GTGESYVFRM NKEMELPEIY TWVGNSPDVS 120
  121 SDKCPQYFMS ATDKSFVIGS GGRDAIRIDE ELTHGITGPS STFNSPQLCE DGAFDIYELE 180
  181 VFHVTSSD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle