| Protein: | gar-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 622 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gar-1.
| Description | E-value | Query Range |
Subject Range |
|
|
328.0 | [0..1] | [622..1] |
|
Region A: Residues: [1-280] |
1 11 21 31 41 51
| | | | | |
1 MPNYTVPPDP ADTSWDSPYS IPVQIVVWII IIVLSLETII GNAMVVMAYR IERNISKQVS 60
61 NRYIVSLAIS DLIIGIEGFP FFTVYVLNGD RWPLGWVACQ TWLFLDYTLC LVSILTVLLI 120
121 TADRYLSVCH TAKYLKWQSP TKTQLLIVMS WLLPAIIFGI MIYGWQAMTG QSTSMSGAEC 180
181 SAPFLSNPYV NMGMYVAYYW TTLVAMLILY KGIHQAAKNL EKKAKAKERR HIALILSQRL 240
241 GTQVGVSLML QSKAEKEKAE EAQKDSGYTS NQAGGSLNTE
|
| Detection Method: |  |
| Confidence: | 32.522879 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [281-453] |
1 11 21 31 41 51
| | | | | |
1 NDQNLGVIEE ERSGFLSRRE SNESYYPGPH PTAANSRRCS EMEKVSLLSE SDGVPSTRPA 60
61 KSYGRLSLRS RYSASESITT THENDEKEVE KADSLQKLFA DDELGSVLNF KEEKLKNTDS 120
121 NNDSDTTSVI LQRSRKYKKN KRPRSSRRSE HSTPRQIAKV KQAEGTAAQL IEE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [454-622] |
1 11 21 31 41 51
| | | | | |
1 SVPDDDQTET IEVKRTDRWV VSMKKRIARA LIRRRSTTRP ERGSSSNSEK ISTISTVITR 60
61 EKVISSIFAP IAVFNRGRKQ TKAEKRAHKA FRTITFIVGF FAILWSPYYI MATVYGFCKG 120
121 ECIPSFLYTL SYYMCYLNSS GNPFAYALAN RQFRSAFMRM FRGNFNKVA
|
| Detection Method: | |
| Confidence: | 4.1 |
| Match: | 1f88A |
| Description: | Rhodopsin |
| Matching Structure (courtesy of the PDB): |
|
