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View Structure Prediction Details

Protein: pnk-1
Organism: Caenorhabditis elegans
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pnk-1.

Description E-value Query
Range
Subject
Range
pnk-1 - status:Confirmed UniProt:P91029 protein_id:AAB42246.2
542.0 [0..1] [382..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHTSVTSSR RISPRGSPPN LRRTPPKIRK VLVLREKRAA ATEDQIMDDL LLSSKLKRVD  60
   61 SATGSVSPRV CAADALPTTT PAASTALRQT QKAPKTPYVI LPASDT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEKFRKTSRV SVDIGGTLIK VVYSSVMDEE LPEESLNGHT RKYAYEDGKR VLVNFKKFTD  60
   61 MDRFINFLKE VWTDRKRGDV IHCTGGGSYK YSEIIMKELG VRLQRTDEMR SLIFGVNFLL 120
  121 STNVDESFTY HHDAIGRNKF QYRPIAADLI YPFLLVNIGT GISILKVDSP TSYERVGGSS 180
  181 MGGGTFMGLG SLLTPAQNFD ELLEMANRGD HRNVDKLVCD IYGGAYDELG LKADLIAGSM 240
  241 AKCNRFEETT KKQQHKPEDI AKSLLLMVSN NIGQIFSDGI FVWHSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 103.0
Match: 2i7nA
Description: No description for 2i7nA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle