YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: let-721
Organism: Caenorhabditis elegans
Length: 597 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for let-721.

Description E-value Query
Range
Subject
Range
gi|187023987, gi... - gi|39581016|emb|CAE72497.1| Hypothetical protein CBG19676 [Caenorhabditis briggsae], gi|187023987|em...
gi|157758865 - gi|157758865|ref|XP_001671776.1| Hypothetical protein CBG19676 [Caenorhabditis briggsae AF16]
556.0 [0..1] [597..1]

Back

Predicted Domain #1
Region A:
Residues: [1-597]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISGVTLFR VSSQLRNVVN GQWTTTHYTV KDRSTDPRWK DVDLARESDV YDVVIVGGGP  60
   61 SGLSAAIRLR QLAEKAQKEL RVCVVEKASV IGGHTLSGAV IETRALDELI PNWKELGAPV 120
  121 YQQVTSESIA ILTESGRIPV PVLPGVPLAN HGNYIVRLGK VVQWLGEQAE AAGVEVWPEI 180
  181 AASEVLYNED GSVKGIATSD VGIGKDGAPK DGFARGMEFH AKCTIFAEGC RGHLSKQVLD 240
  241 KFDLRTHAMT YGIGLKELWE IDPAKHRPGY VEHTMGWPLN VDQYGGSFLY HIEDQGQPLV 300
  301 SVGFVVALDY ANPNLNPYKE FQKYKTHPSI SKQLEGGKRI GYGARALNEG GFQSIPKLHF 360
  361 PGGCLVGCSA GFLNVAKLKG THNAMKSGMV AAESIFEDIQ QKGEDVQTID PATYDKNIRD 420
  421 TYVVKELKAT RNIRPSFNTS LGYIGGLIYS GIFYVFGRGI EPWTLGHGKK DNEKLIPVKD 480
  481 AKEIDYPKPD GKLTFDLLTS VSLTGTNHTE DQPAHLTLKN DQVPLDVNLA VYGGPEARFC 540
  541 PAGVYEFVPS EADESKKRLQ INAQNCIHCK TCDIKDPQQN INWVTPEGGG GPKYEGM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 153.0
Match: 2gmhA
Description: No description for 2gmhA was found.

Predicted functions:

Term Confidence Notes
NADH dehydrogenase activity 6.5929955386305 bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity 6.45562261241375 bayes_pls_golite062009
NADH dehydrogenase (quinone) activity 6.34963309803617 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 5.69483449389334 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 4.45434904225178 bayes_pls_golite062009
oxidoreductase activity 3.38767199872766 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.11137503143637 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.04960158864768 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.87261684242536 bayes_pls_golite062009
formate dehydrogenase activity 2.79579164562277 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor 2.25002926602325 bayes_pls_golite062009
electron-transferring-flavoprotein dehydrogenase activity 1.55451764082771 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.45104542724719 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 1.35744482443829 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.31328088143083 bayes_pls_golite062009
transporter activity 1.29839290134235 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 1.08975609376408 bayes_pls_golite062009
binding 1.08897727611544 bayes_pls_golite062009
transmembrane transporter activity 1.07862908893913 bayes_pls_golite062009
catalytic activity 1.03127962968326 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.69501605197281 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors 0.643810447309487 bayes_pls_golite062009
substrate-specific transporter activity 0.556967966402473 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.31459693204333 bayes_pls_golite062009
active transmembrane transporter activity 0.301257942260531 bayes_pls_golite062009
protein binding 0.247306689726508 bayes_pls_golite062009
nucleic acid binding 0.162130833238942 bayes_pls_golite062009
NADPH-adrenodoxin reductase activity 0.10059033442163 bayes_pls_golite062009
primary active transmembrane transporter activity 0.0724852054074128 bayes_pls_golite062009
DNA binding 0.022476246602636 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle