| Protein: | hlh-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 319 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hlh-1.
| Description | E-value | Query Range |
Subject Range |
|
|
192.0 | [0..1] | [301..1] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MNTETSTQSA PSDTYDTSIY YNSSPRVTAN DITTLTSFAA PAPQVLDYAN TQYDIYRNQP 60
61 AYYLPSYAPT APTTFYSDFA NFNVTRSQDF ASVPAVANSS DVKPIIIKQE KSTPNATELI 120
121 IQSRVDSQHE DTTTSTAGGA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [141-224] |
1 11 21 31 41 51
| | | | | |
1 GVGGPRRTKF VLSVDRRKAA TMRERRRLRK VNEAFEVVKQ RTCPNPNQRL PKVEILRSAI 60
61 DYINNLERML QQAGKMTKIM EQNQ
|
| Detection Method: | |
| Confidence: | 17.09691 |
| Match: | 1mdyA |
| Description: | Myod B/HLH domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.28018660287528 | bayes_pls_golite062009 |
| transcription regulator activity | 1.87754990073909 | bayes_pls_golite062009 |
| DNA binding | 1.73664400879211 | bayes_pls_golite062009 |
| transcription factor activity | 1.6095946900662 | bayes_pls_golite062009 |
| nucleic acid binding | 1.57122223638621 | bayes_pls_golite062009 |
| protein binding | 0.78099405089238 | bayes_pls_golite062009 |
| transcription activator activity | 0.314165294474 | bayes_pls_golite062009 |
|
Region A: Residues: [225-319] |
1 11 21 31 41 51
| | | | | |
1 HLQMTQQING APPHDYVTSS HFASSSYNPE NMFDDDDLTD SDDDRDHHKL GNGELLLKTN 60
61 GRSASAKLFG QIVADRCEHS QRGSNDRRTT PPTSK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
