YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE29529
Organism: Caenorhabditis elegans
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29529.

Description E-value Query
Range
Subject
Range
gi|60468186 - gi|60468186|gb|EAL66196.1| hypothetical protein DDB0204910 [Dictyostelium discoideum]
gi|66812030, gi|... - gi|66812030|ref|XP_640194.1| hypothetical protein [Dictyostelium discoideum AX4], gi|60468186|gb|EAL...
151.0 [0..36] [336..217]

Back

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQISFRKCLI FYQMSSMERQ NELQKITIIR VICSVQLISM IAVTAHSTAM PFLVRIANKT  60
   61 HFLPTTSVFM MEVLKLGFCL IITLFKSGSI KK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TCHELHKTIW QNRLETMKVA VPAVVYAIQN NLYYIALANV DPTTYSVTLQ IRILTTAALS  60
   61 VCLLNKKLSW YQWGAQVMAL LGVVIVQLDK TNSHKEA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.08
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [190-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGNFWIGVSA VVGMCWTSAF AGVYFEKMLK NSSADVWIQN IRLSILTLFF AGITMITTDG  60
   61 EAVFGGRMFE GWSNMVWLVT ILNSVGGLCI SLVMKYADNV MKTYCQSIAI GLTSLVSICL 120
  121 GERILTVYLV YGVTLVTSSV VVYSLFPVAP PALSDYHKLE QQDDVAELLK SSGVEDEEEE 180
  181 EDEIFGELEH KIEL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle