| Protein: | avr-14 |
| Organism: | Caenorhabditis elegans |
| Length: | 416 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for avr-14.
| Description | E-value | Query Range |
Subject Range |
|
|
330.0 | [0..1] | [416..1] |
|
Region A: Residues: [1-341] |
1 11 21 31 41 51
| | | | | |
1 MWHYRLTTIL LIISIIHSIR AKRKLKEQEI IQRILKDYDW RVRPRGMNAT WPDTGGPVLV 60
61 TVNIYLRSIS KIDDVNMEYS AQFTFREEWT DQRLAYERYE ESGDTEVPPF VVLATSENAD 120
121 QSQQIWMPDT FFQNEKEARR HLIDKPNVLI RIHKNGQILY SVRLSLVLSC PMSLEFYPLD 180
181 RQNCLIDLAS YAYTTQDIKY EWKEKKPIQQ KDGLRQSLPS FELQDVVTDY CTSLTNTGEY 240
241 SCLRTRMVLR REFSYYLLQL YIPSFMLVIV SWVSFWLDKD SVPARVTLGV TTLLTMTTQS 300
301 SGINAKLPPV SYTKAIDVWI GVCLAFIFGA LLEFALVNYA A
|
| Detection Method: |  |
| Confidence: | 63.69897 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [342-416] |
1 11 21 31 41 51
| | | | | |
1 RKDMTQVSQR IRQMKQLPTE GYRPLSASQG RSSFCCRIFV RRYKERSKRI DVVSRLVFPI 60
61 GYACFNVLYW AVYLM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
