| Protein: | msi-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 320 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for msi-1.
| Description | E-value | Query Range |
Subject Range |
|
|
233.0 | [0..3] | [319..143] |
|
Region A: Residues: [1-242] |
1 11 21 31 41 51
| | | | | |
1 MTTTVSTGAT AVATLRETSP PVDGHEEARL NADSDDGSHG SQDPGKMFIG GLSWQTTAEN 60
61 LRDYFGRFGE VNECMVMRDP ATKRARGFGF ITFVDPSSVD KVLNNREHEL DGKKIDPKVA 120
121 FPKRTQAKLV TKTKKVFIGG LSATSTLEDM KQYFETYGKV EDAMLMFDKA TQRHRGFGFV 180
181 TFDSDEVADK VCEIHFHEIN GKMVECKKAQ PKEVMLPVQL NKSRAAAARN LYGMPPETLL 240
241 AY
|
| Detection Method: |  |
| Confidence: | 52.39794 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.44552682116509 | bayes_pls_golite062009 |
| snRNA binding | 3.28448936696877 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.26303528058407 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| protein binding | 1.02232785292059 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [243-320] |
1 11 21 31 41 51
| | | | | |
1 AQYLPRFGGN LMYPNFTNVF NNMPGGYSGL STPGGSSNRP PHQFDTASLY SLNNGGQLLD 60
61 SQAQMFMNQQ SYHSHSKY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
