YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: nkat-3
Organism: Caenorhabditis elegans
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nkat-3.

Description E-value Query
Range
Subject
Range
gi|18977625, gi|... - gi|18977625|ref|NP_578982.1| aspartate aminotransferase [Pyrococcus furiosus DSM 3638], gi|18893347|...
366.0 [0..26] [441..3]

Back

Predicted Domain #1
Region A:
Residues: [1-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSKTFLNL VRTSRCRMSS SFAPKPAERT AQHSASIWVE FTTLAAETKA VNLGQGFPDS  60
   61 PAPKFVTDLL ENLSKHPELT AAHQYTRGYG HPMLVDILAK MYSHFYNVQV DPMNEVLVTV 120
  121 GAYLSLYYAF LGWVNKGDEV LIIEPAYDCY YPQVKFAGGV PVPVVMNLAE GATSASQFTI 180
  181 DFADMESKIN EKTKMLVINN PHNPTGKLFS RHELEKLAEI AKKHNLIVIA DEVYEFHVWD 240
  241 KNDMVRFASL PGMYERTISI GSAGKAFSVT GWKLGWAVGP KQLLEPLKAI HQNCVFTCST 300
  301 PTQMAIAEAF RLDWPKFLSD PENSYLATGL SGELRAKRDK LAKMLEEGNF RPIIPDAGYF 360
  361 MLADYVHLKE GINLPTEEDP DDFVFSRWLC REKKLAVIPP SAFYSARDNK LKNSNMVRLC 420
  421 YFKKDETLDA AEEILKKLGK Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.221849
Match: 1yiyA
Description: Aedes aegypti kynurenine aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-aspartate:2-oxoglutarate aminotransferase activity 5.51961002550688 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.63055151623667 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.63055151623667 bayes_pls_golite062009
transferase activity 1.44093490824786 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
4-aminobutyrate transaminase activity 0.99097016439114 bayes_pls_golite062009
5-aminolevulinate synthase activity 0.54326874956263 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.319452731970428 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
aromatic-amino-acid:2-oxoglutarate aminotransferase activity 0.0916183433120769 bayes_pls_golite062009
cystathionine beta-lyase activity 0.0833010353195099 bayes_pls_golite062009
nucleic acid binding 0.013097682076602 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle