| Protein: | rabs-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 563 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rabs-5.
| Description | E-value | Query Range |
Subject Range |
|
|
243.0 | [0..13] | [563..9] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MIGATGSGGT GGHNDVVRQG FICPFCMEDF GEYERLICHV ENDHPEEDSS DLAGMFVSNV 60
61 KGFFDKAKRG I
|
| Detection Method: |  |
| Confidence: | 1.08 |
| Match: | 1zr9A |
| Description: | Solution Structure of a Human C2H2-type Zinc Finger Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.50992180750732 | bayes_pls_golite062009 |
| DNA binding | 0.498426800579378 | bayes_pls_golite062009 |
| protein binding | 0.256933966897135 | bayes_pls_golite062009 |
| nucleic acid binding | 0.157901703714467 | bayes_pls_golite062009 |
|
Region A: Residues: [72-240] |
1 11 21 31 41 51
| | | | | |
1 QKLDAKKSIA DLASNVETEF TETTEKLVER APLPRIPKPL PPDEILPGTR RSKTREFLST 60
61 RELNINEVAV RTNMLIIRLD RLINGGPKDK DPVKRKEFER EVVPWLDDAE AVCCPLCASR 120
121 FGLTRRRHHC RLCGRVLCHS CSKFLSFDTA KTLTSSSNPL GDTHIIVEE
|
| Detection Method: | |
| Confidence: | 20.09691 |
| Match: | 1dvpA |
| Description: | Hrs |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.44665404880348 | bayes_pls_golite062009 |
| protein binding | 0.727943518881877 | bayes_pls_golite062009 |
|
Region A: Residues: [241-315] |
1 11 21 31 41 51
| | | | | |
1 PNTVENEQEL LQPEENGRRS FFSLSQKSMD KMKRAMAGAV QKVHSAATGE EIIAGALNEQ 60
61 DLSEHMRVCN LCLRD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [316-563] |
1 11 21 31 41 51
| | | | | |
1 LHFRESQMDK KEPPEFVQQY DLMKVMIEEV KNLVPTYVRV VTSLKNGESV YSHKHGEELR 60
61 SKCLEIQKSI DYVSKKIAEG ANDKPNSAKE QQLRKNIRLY AVQALQGLIG QMESLPTAEE 120
121 CSNLIIKRKE RRAKDFARVN RTVMKMSSSM PQLQEQHSHL NSTSSVSSFG GPSSIDDGWS 180
181 AEDNDLVFEP SSIEDDTIQT DHPLYEQREQ LRKFLFQASA TGKLDEMDIL ERNLKEIEEE 240
241 MMRLGLSC
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
