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Protein Overview: rabs-5

General Information:
Name(s) found: rabs-5 / CE29111 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00021538 locus:rabs-5 status:Partially_confirmed UniProt:Q9N3Y4 protein_id:CCD71168.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 563 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    phosphatidylinositol-3-phosphate binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGATGSGGT GGHNDVVRQG FICPFCMEDF GEYERLICHV ENDHPEEDSS DLAGMFVSNV  60
   61 KGFFDKAKRG IQKLDAKKSI ADLASNVETE FTETTEKLVE RAPLPRIPKP LPPDEILPGT 120
  121 RRSKTREFLS TRELNINEVA VRTNMLIIRL DRLINGGPKD KDPVKRKEFE REVVPWLDDA 180
  181 EAVCCPLCAS RFGLTRRRHH CRLCGRVLCH SCSKFLSFDT AKTLTSSSNP LGDTHIIVEE 240
  241 PNTVENEQEL LQPEENGRRS FFSLSQKSMD KMKRAMAGAV QKVHSAATGE EIIAGALNEQ 300
  301 DLSEHMRVCN LCLRDLHFRE SQMDKKEPPE FVQQYDLMKV MIEEVKNLVP TYVRVVTSLK 360
  361 NGESVYSHKH GEELRSKCLE IQKSIDYVSK KIAEGANDKP NSAKEQQLRK NIRLYAVQAL 420
  421 QGLIGQMESL PTAEECSNLI IKRKERRAKD FARVNRTVMK MSSSMPQLQE QHSHLNSTSS 480
  481 VSSFGGPSSI DDGWSAEDND LVFEPSSIED DTIQTDHPLY EQREQLRKFL FQASATGKLD 540
  541 EMDILERNLK EIEEEMMRLG LSC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..71] FFAS03 1.08 Solution Structure of a Human C2H2-type Zinc Finger Protein
    2 View Details [72..240] PSI-BLAST 20.09691 Hrs
    3 View Details [241..315] deduced N/A No confident structure predictions are available.
    4 View Details [316..563] PSI-BLAST 5.69897 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.50992180750732 bayes_pls_golite062009
  • DNA binding
    		•  0.498426800579378 bayes_pls_golite062009
  • protein binding
    		•  0.256933966897135 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.157901703714467 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.44665404880348 bayes_pls_golite062009
  • protein binding
    		•  0.727943518881877 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle