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View Structure Prediction Details

Protein: cku-70
Organism: Caenorhabditis elegans
Length: 691 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cku-70.

Description E-value Query
Range
Subject
Range
gi|67968771 - gi|67968771|dbj|BAE00743.1| unnamed protein product [Macaca fascicularis]
501.0 [0..10] [682..27]

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Predicted Domain #1
Region A:
Residues: [1-691]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDETRFEDDD FEGSTANKKY TFFIIDGNPA MFETSKAGEP PEFKLALKLI LDEIVRVCCS  60
   61 RSLNNHIGVI VTSTKNSETE GLENSTLLVP MGVLGQEEVN KIKEIAEEEN LLSAVNNYGG 120
  121 DHHKSDLSNV LNYCKRVFAS CSNTRHQSVI YLTNNRNPFE RDDFLESSHF KRTKAAVTKI 180
  181 IGEGHRKTLG EFSVIMLPED GYKPQDKDEK RKEPWYDLDT EVFSTECDAA ARIRQKITAQ 240
  241 RSHATLTVNV GPGVTFDVSV FSMVMEAKPL DHSQKYTRDT EEKIVKTSGY VKKESKMELE 300
  301 STEIETQDSV LDETQKMLIR CKNFFCCENS EKNEFLEDSI RNRRDLKKSI EIGGEKIILD 360
  361 GDQYEYMNEV NSKGVDFVGF CSMSRVDRET SVVSSKIIQP NDQTTLGSTA IYRTFLDRCW 420
  421 ARQQAIVCKY QSRSKQKMRL MALVPFKKDM TLIEKRHENG EDDDDMEDKK PDLLRLEQQR 480
  481 AQADSSEWLH EGFMLVGQPF REELRDDFKR FEEQQNVLTE PSTEEQVNTM KQFVKRLTMS 540
  541 YNPSFYENPR LLSERSALCL EATGEELIER RDTLEPYYQI PKRLQRVGTE IEKIVETFAL 600
  601 NDEIKETKPK ASAGRKRKTD DDEPSTSKKA TMTIRDCIAA DKIGKFKKDE LLSMAVEHCE 660
  661 ASKSLKSKTK NDIIAVIEAY LDENPSATWN I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 138.0
Match: 1jeqA
Description: DNA binding C-terminal domain of ku70; Ku70 subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.981851677550686 bayes_pls_golite062009
protein binding 0.83757188492226 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle