| Protein: | lin-17 |
| Organism: | Caenorhabditis elegans |
| Length: | 556 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-17.
| Description | E-value | Query Range |
Subject Range |
|
|
369.0 | [0..1] | [514..456] |
|
Region A: Residues: [1-170] |
1 11 21 31 41 51
| | | | | |
1 MMHSLGIILL FIPLATGSIF DQAVKGKCIP IDIELCKDLP YNYTYFPNTI LHNDQHTLQT 60
61 HTEHFKPLMK TKCHPHIHFF ICSVFAPMCP IGMPQAVTSC KSVCEQVKAD CFSILEEFGI 120
121 GWPEPLNCAQ FPDPPELCMK PTEDEITGGF SAPRLPTKGS SSSSSKPTGC
|
| Detection Method: |  |
| Confidence: | 35.30103 |
| Match: | 1ijyA |
| Description: | Frizzled 8 (FZ8) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| Wnt receptor activity | 5.34849208575619 | bayes_pls_golite062009 |
| Wnt-protein binding | 4.48351937520811 | bayes_pls_golite062009 |
| transmembrane receptor activity | 4.38708793497137 | bayes_pls_golite062009 |
| receptor activity | 4.1046853496316 | bayes_pls_golite062009 |
| signal transducer activity | 3.17034085692897 | bayes_pls_golite062009 |
| molecular transducer activity | 3.17034085692897 | bayes_pls_golite062009 |
| binding | 1.75284371400205 | bayes_pls_golite062009 |
| protein binding | 1.1012033332744 | bayes_pls_golite062009 |
|
Region A: Residues: [171-556] |
1 11 21 31 41 51
| | | | | |
1 PSDLVDVDPH DPKSHCAFAC QSNVMFSTDN KRMVRSWSIW FAAANAGVAL FSFLTFAIDR 60
61 KRFRFPERCV FYLSLCIFIS SLPYLTPLFI DAPIRSCHAL GNGRSYLSIG TFDNSYCLAS 120
121 FLLNYFFSTA AALWWLMFSF TLYLSGGRKW VPEGIEACSS YVHFVAWGLS SLATIIVLIF 180
181 NKVDASELTA LCSVGNLNSI ALLWFVIVPR TICIVIGTCF IVGGFASMCR ERISFRTRGT 240
241 DTSKLEKLMV KMGFFCALFI LPNVIELVCQ CYKFMILTQW TRMTIDCKQQ SGACHRPTPP 300
301 QAEIYMTAVI SSLATGFSCL MWVLSAKTVH AWKNFIFCGM CSSAPVKVKP NRAINTSIAR 360
361 ATNCSATTTT GIHANGDESS EFMETQ
|
| Detection Method: | |
| Confidence: | 18.69897 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
