YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: inx-16
Organism: Caenorhabditis elegans
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for inx-16.

Description E-value Query
Range
Subject
Range
inx-1 - status:Confirmed UniProt:Q17394 protein_id:AAN71842.1
388.0 [0..6] [357..2]

Back

Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLGNIKTY AQTVTSLSDN DDTSIDRLNY VVTTSILIAF SLLLFAKNYV GEPMQCWTPN  60
   61 QFAGGWESFA ESYCFIENTY FVPMQDSNLP AAETREGREM IYYQWVPFLL VIQALFFCVP 120
  121 RAFWIIY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSYSGLTIAD MITAARQNGK QLEGADEALE QVAMINWRTE QQKGHGSRIF NCYLVMKLLI  60
   61 LLNIVLQFFL LNSFLNTAYT FWGWGIFWDM VNGRHWQESG HFPRVSFCDI NVRELGNIHH 120
  121 WSLQCVL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [255-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNMFNEKIF IFLWFWFAFL LVATAGDFVI WVWRRFDSNS KLGFILDLLN QEGIDHSPQK  60
   61 ASELYKNVLR DDGVLFLRLL DSNSGRLNSE ELMKKIYNIS VGHATDLNTP IEEHATSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle