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View Structure Prediction Details

Protein: CE28472
Organism: Caenorhabditis elegans
Length: 338 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28472.

Description E-value Query
Range
Subject
Range
CE11322 - status:Partially_confirmed UniProt:O01824 protein_id:AAB54184.1
253.0 [0..1] [338..1]

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Predicted Domain #1
Region A:
Residues: [1-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRALFSSI LFSFKTYFSK KIDSVFQMSS SELIAELERE RDRRVLSIQS HVVHGYAGNK  60
   61 CSVFPLQLHG FEVDFINSVQ FSNHAGYEHV KGQKLTEKEL EELYEGLTLN NINNYTHVLT 120
  121 GYCGNVTFLQ KIADVVKDLK KKNGNTTFVC DPVMGDNGRY YTPKELMPVY RDLIIPLADV 180
  181 LTPNAFELGE LTGSPIETEE DCLRAVNELH AKGVKTVVVT SGVTGAQTNE SLRCYASVKG 240
  241 SHVYRFTFPR LVGQFVGTGD TFTSLLVVWL DELNGDVSEA VKRVLASMQC LIRKTSSYAQ 300
  301 LQVDTNSRAM CELRLIQSRK DLLWPPTCDQ IQVEKIGQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.154902
Match: 1lhpA
Description: Pyridoxal kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
kinase activity 3.96411195020495 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 3.67035256855428 bayes_pls_golite062009
transferase activity 3.30865420017814 bayes_pls_golite062009
lithium ion binding 3.00550221878163 bayes_pls_golite062009
sodium ion binding 2.93046843966773 bayes_pls_golite062009
pyridoxal kinase activity 2.62798458074822 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 2.56927916030784 bayes_pls_golite062009
phosphomethylpyrimidine kinase activity 2.12104666683074 bayes_pls_golite062009
pyridoxal binding 2.04719269680858 bayes_pls_golite062009
catalytic activity 1.74474587246986 bayes_pls_golite062009
binding 1.4216897826135 bayes_pls_golite062009
carbohydrate kinase activity 1.32862180479506 bayes_pls_golite062009
nucleic acid binding 1.23363144435362 bayes_pls_golite062009
transcription regulator activity 1.21529398967164 bayes_pls_golite062009
potassium ion binding 1.18018952731159 bayes_pls_golite062009
alkali metal ion binding 1.18018952731159 bayes_pls_golite062009
DNA binding 0.954497955488766 bayes_pls_golite062009
transcription factor activity 0.376784274163604 bayes_pls_golite062009
protein binding 0.117280046908929 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle