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View Structure Prediction Details

Protein: CE28316
Organism: Caenorhabditis elegans
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28316.

Description E-value Query
Range
Subject
Range
gi|7503068 - gi|7503068|pir||T16306 hypothetical protein F40F4.7 - Caenorhabditis elegans
164.0 [0..1] [245..453]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDQQTNNES DHTMSKSAKK RAKKQQQQKR ASESNDEKNS PTKSDAENTE AVSTPEKVSD  60
   61 SVEPEKQDQV DQLVPLINKF DVNGKALKTI AGHG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVHLGEITPH NILQLKKLNE DVFPIAYNDK FYVEARYCGE LGRLAYYNDV VVGAVCCRID  60
   61 DISDEKSLYL MTLGTLAAYR QIGIGTILID YALKLCNKME EIKTMYLHVQ VNNKNAVQFY 120
  121 EKHGFTNDGI IEDYYRISPR DAYLLIKRIR H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.69897
Match: 2ob0A
Description: No description for 2ob0A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle