YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE28316
Organism: Caenorhabditis elegans
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE28316.

Description E-value Query
Range
Subject
Range
gi|7503068 - gi|7503068|pir||T16306 hypothetical protein F40F4.7 - Caenorhabditis elegans
164.0 [0..1] [245..453]

Back

Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDQQTNNES DHTMSKSAKK RAKKQQQQKR ASESNDEKNS PTKSDAENTE AVSTPEKVSD  60
   61 SVEPEKQDQV DQLVPLINKF DVNGKALKTI AGHG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVHLGEITPH NILQLKKLNE DVFPIAYNDK FYVEARYCGE LGRLAYYNDV VVGAVCCRID  60
   61 DISDEKSLYL MTLGTLAAYR QIGIGTILID YALKLCNKME EIKTMYLHVQ VNNKNAVQFY 120
  121 EKHGFTNDGI IEDYYRISPR DAYLLIKRIR H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.69897
Match: 2ob0A
Description: No description for 2ob0A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle