YRC Public Data Repository - Protein Structure Prediction

Protein:	lec-11
Organism:	Caenorhabditis elegans
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lec-11.

Description	E-value	Query Range	Subject Range
gi\|3299781, gi\|1... - gi\|3299781\|dbj\|BAA31542.1\| ecalectin [Homo sapiens], gi\|193785124\|dbj\|BAG54277.1\| unnamed protein pr...	226.0	[0..4]	[228..9]
gi\|4995880 - gi\|4995880\|emb\|CAB44278.1\| urate transporter/channel protein (UATp) [Sus scrofa]	225.0	[0..4]	[227..9]
gi\|59858325, gi\|... - gi\|62751460\|ref\|NP_001015570.1\| galectin-9 isoform 2 [Bos taurus], gi\|59858325\|gb\|AAX08997.1\| galect...	224.0	[0..5]	[227..10]
gi\|114668814 - gi\|114668814\|ref\|XP_001156813.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	224.0	[0..4]	[228..9]
gi\|50979200, gi\|... - gi\|50979200\|ref\|NP_001003345.1\| galectin-9 [Canis lupus familiaris], gi\|46102473\|gb\|AAS80311.1\| gale...	220.0	[0..4]	[226..9]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHVIENPPI PLTTPIYEGM REHSSVEIHG EVFQGPQGGF TVEFPTKNGV ALHISVRMGS  60
   61 YGQNVIVFNH LQRGRWHREE HHQNTIMFGR PFCMRIHNEH RKYSIHVDGH HIGHYHHHKC 120
  121 PKRIVAMTVR GDLRVGKIHF E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	2eakA
Description:	No description for 2eakA was found.

Predicted Domain #2

Region A:
Residues: [142-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFKHHNGGGT EIGVMQMPVA PTPIVVAQPP PPMIVPQPQI VPVVQQIMQP MVQPIYPSVQ  60
   61 PIVYPTATPI IYTQPEVIYM DGYHHHRHHH Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits