| Protein: | top-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 759 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for top-3.
| Description | E-value | Query Range |
Subject Range |
|
|
721.0 | [0..1] | [750..1] |
|
Region A: Residues: [1-607] |
1 11 21 31 41 51
| | | | | |
1 MKRALFVAEK NDVAKGVAAI LSNGTANRRE GRSKFNKIYT LNTELFGQQT AISVTSVSGH 60
61 MMNFQFHENM SNWQTASMVE LFRAPVRHVV TPEMKLIEQT LREQAQRHDI LVVWTDCDRE 120
121 GEAIGAEIVK VCRDSNRRLD IFRARFSEIT KAAITRAARN LIRLDEKTVA AVDCRSELDL 180
181 RIGSAFTRLQ TLHLRNRFRD LLGQNDTSQV ISYGSCQFPT LGFVTDRYKM IENFVSEPFW 240
241 KLIVEHTRES HKVEFLWDRN RLFDRDTVDI LHDECKETKE AHVEKVAKKP KSKWRPQALD 300
301 TVELEKLGIS KLRMSAKQTM QVAEKLYSKG FISYPRTETN KFPAGLNLTP LVQQQTQSNI 360
361 WGDFANEVLQ NGVNPRNGRK SDEAHPPIHP LKFTEKHQLQ GDDWKVYELV VRHFLACVSQ 420
421 DAQGEETMVN LTVGTEKFHA SGLRIRDMGY LKVYVYEKWG NRLLPTYTEG ERFTDFELKI 480
481 GDGKTQAPDF LTEADLISLM DKYGIGTDAT HAEHIEKIKT REYIGVRPDG KLIPSFLGLA 540
541 LVDGYDDMGF AMSKPDLRAN LEIGLKEICD GRRQKQEVLD EQIGKYRAIF VESERKIGVL 600
601 SQSLQRY
|
| Detection Method: |  |
| Confidence: | 1000.0 |
| Match: | 1eclA |
| Description: | AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1). |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA topoisomerase activity | 10.2798831210729 | bayes_pls_golite062009 |
| DNA topoisomerase type I activity | 8.04585827786358 | bayes_pls_golite062009 |
| isomerase activity | 5.61256457337998 | bayes_pls_golite062009 |
| DNA binding | 5.20730175008144 | bayes_pls_golite062009 |
| nucleic acid binding | 4.95671919332271 | bayes_pls_golite062009 |
| binding | 4.3089127577748 | bayes_pls_golite062009 |
| catalytic activity | 1.50449367975676 | bayes_pls_golite062009 |
| protein binding | 0.377429709958808 | bayes_pls_golite062009 |
|
Region A: Residues: [608-759] |
1 11 21 31 41 51
| | | | | |
1 LDKNNQAGGG PGGPGGGGGP PRGPGGGGGG GPTGPPAPPK PPAKPRGRPP RKSISPAVKN 60
61 GHDDPENDTI VTLSEVFGSM SNPKPARKPR APRKSAAPKE QEEEEEVFCQ CPEPMRAVTK 120
121 VVQKEGPNKG KKFYTCSLPY TSSEKCNFFK WA
|
| Detection Method: | |
| Confidence: | 1.19 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
