| Protein: | mex-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 494 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mex-1.
| Description | E-value | Query Range |
Subject Range |
|
|
215.0 | [0..1] | [417..1] |
|
Region A: Residues: [1-139] |
1 11 21 31 41 51
| | | | | |
1 MQSSNGEHHQ QKQTPYFMNA PCDPALLALA QQTFLGFQPQ KNMYQHGFPP MLPHRNLIPS 60
61 LAAAIPEMDK LMLEEPIEAG SMPYRRATNK NISVSDDSFN NMHRSSSSSQ YRRHSAQWET 120
121 MTDDERESVQ RQKRKEEAF
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [140-227] |
1 11 21 31 41 51
| | | | | |
1 KTALCDAFKR SGSCPYGEAC RFAHGENELR MPSQPRGKAH PKYKTQLCDK FSNFGQCPYG 60
61 PRCQFIHKLK KGLPLSEYNR ALQEGEIS
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 1rgoA |
| Description: | Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [228-348] |
1 11 21 31 41 51
| | | | | |
1 PARDDEITNP DESSSQVEDL SELHHRQHQQ QQQYQQRYRR PPFNNFHDMS DSGYSAPRRR 60
61 LHHQFEHLGS EQQQQQQQQT PAPKIVYPSM QVVNIEMATG DGPKRSDNHH YHHHHHQRRH 120
121 I
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [349-494] |
1 11 21 31 41 51
| | | | | |
1 PAPPSTGPLS SLIDQADYEA SMASGKMFGK PENIRTYGAM IRANEEHVER NQTGVVKKER 60
61 ATVLPKRDLS LIREEDTLLV DGSHLNMTSS AILPAHQIPS TTTTSTSSPV QEQPWYEKIF 120
121 GKMTMIQEES SMGGEDDDAH EDHYSR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
