YRC Public Data Repository - Protein Structure Prediction

Protein:	dhs-5
Organism:	Caenorhabditis elegans
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dhs-5.

Description	E-value	Query Range	Subject Range
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	283.0	[0..83]	[332..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTPPPPLS STLIPEESST SFFASLHSLL PTFHVENGAQ LAVTMLLLIP VVYVGYRLYR  60
   61 TFFAFLKAIF IYTIAPLFYK P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLEQYQHRWT VVSGGTDGIG KAYTLELAKR GLRKFVLIGR NPKKLDSVKS EIEEKHSDAQ  60
   61 IKTFVFDFGS GDFSSLRDYI SDIDVGFVVN SVGTGRDNLE RYGDNPDEDT QILRVNGMGA 120
  121 AEFLSCVLPP MEKSGGGQIV VLSSSQGVRP IPMLAAYCAT KALMTFLCES IDREYSTINV 180
  181 QTLIPALVAT KMTYYTKGST FVVTPENFCH QAVGSIGLTK KTAGCLNHEL QMLGFHLFPW 240
  241 TILKYLIMPI YYHQRKRVTE LHNTSNNPEQ EISLQELNEE TVVPTTKKTV TRDSATA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.522879
Match:	2uvdA
Description:	No description for 2uvdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits