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View Structure Prediction Details

Protein: CE27729
Organism: Caenorhabditis elegans
Length: 612 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27729.

Description E-value Query
Range
Subject
Range
CE08359 - status:Partially_confirmed UniProt:O17156 protein_id:AAB71201.1
857.0 [0..1] [612..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEHYNPRN RLKTQIKRRS SCRNILNAVP PPPPTDFEGL EGFTDSCPAP TANNPFKVSS  60
   61 PQKKRQKPQV TFSQDDPFAA SISSFRSPDP LKTPTK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVRSSPRKRK SPQKFERFQS FDPALLQEFH PVDFSALLAT SSSAQKPAEP AQESAEDLPT  60
   61 DLRIGSKMRI VSKVSFPWMN TRKSTGNVIV KFQTNDRFDG MQYFNKTFLN GYEDPTVPLP 120
  121 VSPMSILEAA SLFYQFPVIP GLKMYPRITA EQEYGGAHLQ HLKFEFFCRN VSRV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [271-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLAPLVTSTM LEQWQECYAE LYSSYKKGQR GSFYVATAVC NVLFTKMPLS GGGDDVAADD  60
   61 TSQSCSQAFR GQKLVAVITH TTSAIREHLR SQGVDFEAPK PTSSLKRVSS SPQLHHDQS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [390-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLDCLLASES KENSQMGPTT FGGIENSENS DESPLKKDQD SDENESPMKL ANQWLNEIGV  60
   61 SPRTVKNTVS RELSSQVTDR AGFQCLVVHG SKIHALFNAL MDSDVV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [496-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEKTGPYTKI PPTLIATSPF LYGQLLSLTK SSNIFAKAGT KCTEYELKLE NGPVLPHCAK  60
   61 MMTQFIRSTN MCSTEEKPVT MQVMDRHTSQ GMSDWTETAT NWNTVTIAEN CVKWTKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle