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View Structure Prediction Details

Protein: CE27729
Organism: Caenorhabditis elegans
Length: 612 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27729.

Description E-value Query
Range
Subject
Range
CE08359 - status:Partially_confirmed UniProt:O17156 protein_id:AAB71201.1
857.0 [0..1] [612..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEHYNPRN RLKTQIKRRS SCRNILNAVP PPPPTDFEGL EGFTDSCPAP TANNPFKVSS  60
   61 PQKKRQKPQV TFSQDDPFAA SISSFRSPDP LKTPTK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVRSSPRKRK SPQKFERFQS FDPALLQEFH PVDFSALLAT SSSAQKPAEP AQESAEDLPT  60
   61 DLRIGSKMRI VSKVSFPWMN TRKSTGNVIV KFQTNDRFDG MQYFNKTFLN GYEDPTVPLP 120
  121 VSPMSILEAA SLFYQFPVIP GLKMYPRITA EQEYGGAHLQ HLKFEFFCRN VSRV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [271-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLAPLVTSTM LEQWQECYAE LYSSYKKGQR GSFYVATAVC NVLFTKMPLS GGGDDVAADD  60
   61 TSQSCSQAFR GQKLVAVITH TTSAIREHLR SQGVDFEAPK PTSSLKRVSS SPQLHHDQS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [390-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLDCLLASES KENSQMGPTT FGGIENSENS DESPLKKDQD SDENESPMKL ANQWLNEIGV  60
   61 SPRTVKNTVS RELSSQVTDR AGFQCLVVHG SKIHALFNAL MDSDVV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [496-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEKTGPYTKI PPTLIATSPF LYGQLLSLTK SSNIFAKAGT KCTEYELKLE NGPVLPHCAK  60
   61 MMTQFIRSTN MCSTEEKPVT MQVMDRHTSQ GMSDWTETAT NWNTVTIAEN CVKWTKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle