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View Structure Prediction Details

Protein: CE27718
Organism: Caenorhabditis elegans
Length: 425 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27718.

Description E-value Query
Range
Subject
Range
gi|32562953 - gi|32562953|emb|CAC86209.1| von Willebrand factor [Lemur catta]
303.0 [0..22] [413..25]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQIYLLSLV GALAALAVVV HAQTTPLFPV ACELNVLIVL DRSDSVKGGF NKSRKFVTDV  60
   61 SEELQIGPEK HRVALIVYSG LSYRREVMPW NFAKSNEEFV RKVNALRAIG GTTNTKKALE 120
  121 VGLELMAQRN VSIPTLVMVV TDGRSADDPK GPGQILQAQP NTWVFAAATG DPEKVDTREL 180
  181 MDITGNINHI VMHRGRDLAT DITRRLLRQA QDKCRTT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.30103
Match: 1u0oC
Description: The mouse von Willebrand Factor A1-botrocetin complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [218-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTTTTTTTT TTTDPITGCE LDLVLVLDFS TTTDPVYNSY KDLSKRLVSQ LKIGPHYTQV  60
   61 AAVTFATVGR TRVRFNLKKY QTQEEVLRGI DNLKSRGGTT AIGAGIEKAL TQLDESEGAR 120
  121 PGIATKVMVV FTDGWSNKGP DPEKRARDAV SSGFEMYTVA YTAHTPGAVT LNNETLSAIS 180
  181 GDVHHTFTDV TFQALIDKIK QRNLPCMP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.154902
Match: 2b2xA
Description: No description for 2b2xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle