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View Structure Prediction Details

Protein: CE27565
Organism: Caenorhabditis elegans
Length: 382 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27565.

Description E-value Query
Range
Subject
Range
gi|60468186 - gi|60468186|gb|EAL66196.1| hypothetical protein DDB0204910 [Dictyostelium discoideum]
gi|66812030, gi|... - gi|66812030|ref|XP_640194.1| hypothetical protein [Dictyostelium discoideum AX4], gi|60468186|gb|EAL...
165.0 [0..4] [335..186]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLTVKRQKV GHGIEIDREN EQSSNPIIRV ICSVQLISMI AVTAHSTAMP FLVRIANKTH  60
   61 FLPTTSVFMM EVLKLGFCLI ITLFKSGSIK K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TCHELHKTIW QNRLETMKVA VPAVVYAIQN NLYYIALANV DPTTYSVTLQ IRILTTAALS  60
   61 VCLLNKKLSW YQWGAQVMAL LGVVIVQLDK TNSH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.14
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [186-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEAVGNFWIG VSAVVGMCWT SAFAGVYFEK MLKNSSADVW IQNIRLSILT LFFAGITMIT  60
   61 TDGEAVFGGR MFEGWSNMVW LVTILNSVGG LCISLVMKYA DNVMKTYCQS IAIGLTSLVS 120
  121 ICLGERILTV YLVYGVTLVT SSVVVYSLFP VAPPALSDYH KLEQQDDVAE LLKSSGVEDE 180
  181 EEEEDEIFGE LEHKIEL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle