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View Structure Prediction Details

Protein: cka-2
Organism: Caenorhabditis elegans
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cka-2.

Description E-value Query
Range
Subject
Range
gi|157769425 - gi|157769425|ref|XP_001676533.1| Hypothetical protein CBG14388 [Caenorhabditis briggsae AF16]
gi|39597863, gi|... - gi|39597863|emb|CAE68555.1| Hypothetical protein CBG14388 [Caenorhabditis briggsae], gi|187027868|em...
354.0 [0..1] [429..1]

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Predicted Domain #1
Region A:
Residues: [1-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRKVSRAH YDEDELASAA NMSLVAEGHF RGMKELLSTM DLDTDANTIP ELKERAHMLC  60
   61 ARFLGGAWKT VPLEHLRISR IKGGMSNMLF LCRLSEVYPP IRNEPNKVLL RVYFNPETES 120
  121 HLVAESVIFT LLSERHLGPK LYGIFSGGRL EEYIPSRPLS CHEISLAHMS TKIAKRVAKV 180
  181 HQLEVPIWKE PDYLCEALQR WLKQLTGTVD AEHRFDLPEE CGVSSVNCLD LARELEFLRA 240
  241 HISLSKSPVT FCHNDLQEGN ILLPKASSGN IRMPSLSDET QALGNSLSAF NPADPRLVLI 300
  301 DFEYASYNYR AFDFANHFIE WTIDYDIDEA PFYKIQTENF PENDQMLEFF LNYLREQGNT 360
  361 RENELYKKSE DLVQETLPFV PVSHFFWGVW GLLQVELSPV GFGFADYGRD RLSLYFKHKQ 420
  421 LLKNLASHQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.522879
Match: 1nw1A
Description: Choline kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein kinase activity 4.30960004746003 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 4.07995443484626 bayes_pls_golite062009
kinase activity 3.89987897070552 bayes_pls_golite062009
protein serine/threonine kinase activity 3.70039524176921 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 3.55773222358151 bayes_pls_golite062009
transferase activity 2.57136779276375 bayes_pls_golite062009
binding 1.64878945268884 bayes_pls_golite062009
ATP binding 1.52353103126485 bayes_pls_golite062009
adenyl ribonucleotide binding 1.48174269738296 bayes_pls_golite062009
adenyl nucleotide binding 1.45967951824395 bayes_pls_golite062009
ribonucleotide binding 1.24161418034479 bayes_pls_golite062009
purine ribonucleotide binding 1.23921774982777 bayes_pls_golite062009
purine nucleotide binding 1.22198325574141 bayes_pls_golite062009
nucleotide binding 1.21738858723976 bayes_pls_golite062009
catalytic activity 1.21655087018101 bayes_pls_golite062009
protein binding 0.870256975882046 bayes_pls_golite062009
protein tyrosine kinase activity 0.847174345238246 bayes_pls_golite062009
receptor signaling protein serine/threonine kinase activity 0.721451668935865 bayes_pls_golite062009
choline kinase activity 0.677058874011035 bayes_pls_golite062009
receptor signaling protein activity 0.67181527739702 bayes_pls_golite062009
ethanolamine kinase activity 0.403804055728899 bayes_pls_golite062009
transmembrane receptor protein kinase activity 0.136035352478764 bayes_pls_golite062009
lipid kinase activity 0.0770938558959298 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle