| Protein: | cho-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 576 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cho-1.
| Description | E-value | Query Range |
Subject Range |
|
|
352.0 | [0..1] | [561..4] |
|
Region A: Residues: [1-227] |
1 11 21 31 41 51
| | | | | |
1 MADLLGIVAI VFFYVLILVV GIWAGRKSKS SKELESEAGA ATEEVMLAGR NIGTLVGIFT 60
61 MTATWVGGAY INGTAEALYN GGLLGCQAPV GYAISLVMGG LLFAKKMREE GYITMLDPFQ 120
121 HKYGQRIGGL MYVPALLGET FWTAAILSAL GATLSVILGI DMNASVTLSA CIAVFYTFTG 180
181 GYYAVAYTDV VQLFCIFVGL WVCVPAAMVH DGAKDISRNA GDWIGEI
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [228-308] |
1 11 21 31 41 51
| | | | | |
1 GGFKETSLWI DCMLLLVFGG IPWQVYFQRV LSSKTAHGAQ TLSFVAGVGC ILMAIPPALI 60
61 GAIARNTDWR MTDYSPWNNG T
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [309-503] |
1 11 21 31 41 51
| | | | | |
1 KVESIPPDKR NMVVPLVFQY LTPRWVAFIG LGAVSAAVMS SADSSVLSAA SMFAHNIWKL 60
61 TIRPHASEKE VIIVMRIAII CVGIMATIMA LTIQSIYGLW YLCADLVYVI LFPQLLCVVY 120
121 MPRSNTYGSL AGYAVGLVLR LIGGEPLVSL PAFFHYPMYT DGVQYFPFRT TAMLSSMATI 180
181 YIVSIQSEKL FKSGR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [504-576] |
1 11 21 31 41 51
| | | | | |
1 LSPEWDVMGC VVNIPIDHVP LPSDVSFAVS SETLNMKAPN GTPAPVHPNQ QPSDENTLLH 60
61 PYSDQSYYST NSN
|
| Detection Method: | |
| Confidence: | 1.09 |
| Match: | 1qd7B |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
