| Protein: | spe-9 |
| Organism: | Caenorhabditis elegans |
| Length: | 661 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spe-9.
| Description | E-value | Query Range |
Subject Range |
|
|
382.0 | [0..20] | [638..2016] |
|
Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MNVILVLVVL FFAGDCAKIR KIIDFLEKDA PNDIEKTPNY NEESLAVKRN KNFNPCLENP 60
61 KICSNRGKCL HENGNFYCIC PVTHYGKTCE HVSDQTNCEK HLCQNNSTCV SIKSLRTIVN 120
121 TVLLRQIRVQ RKVNGSKAAL TNEELAEIDL EVNYECICQK GYFGGLCDES EADRTCQEV
|
| Detection Method: |  |
| Confidence: | 17.522879 |
| Match: | 1tozA |
| Description: | NMR structure of the human NOTCH-1 ligand binding region |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [180-549] |
1 11 21 31 41 51
| | | | | |
1 YCLGRGKGAI NATGKCECEC ENQFFGDRCE QISACFDTQC DNGGICEDVV DWKTKTVTAT 60
61 CKCPSAIELI GGTVTGENCE TLQIPSTAPK EFIPCAEGSN STMFFKKFIA NISLEYMDDI 120
121 SELEAIKNDY NDGKNVNGTM TDGWCRNDGK CVPEVVRVNS SRAYYIYRCE CTNPLTDGYY 180
181 CEYKRHDSCS LTREEVARGD RWDEKCTDSQ HGACVDISGV AHCVCKPDYT GEKCEIFDPC 240
241 ARQPCKHGDC IPIPNTADVA FGTSRYQCLC PLSAKLNPES QACMEINEKK CAPGACGNGR 300
301 CVPCESDADD LMPLCNDNDN RQGFRCLCEA GYLPPFCKVH TNPCYQNLCQ NSATCHIDPK 360
361 QRSYDCQCVN
|
| Detection Method: | |
| Confidence: | 9.045757 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.27345206371464 | bayes_pls_golite062009 |
| binding | 1.17619965960956 | bayes_pls_golite062009 |
| receptor binding | 0.74474413948438 | bayes_pls_golite062009 |
|
Region A: Residues: [550-661] |
1 11 21 31 41 51
| | | | | |
1 GTRGSLCENV DDSCDAFGNK ICVHGTCIND EYFHRGFSCE CDDGFEGLDC NVEIAWSSVM 60
61 TNRLMKNYEF SLPLVACFVS LAILLPVIVI SRRRQGRVEE AKKTSEVKTE NP
|
| Detection Method: | |
| Confidence: | 2.15 |
| Match: | 2go59 |
| Description: | No description for 2go59 was found. |
