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View Structure Prediction Details

Protein: CE26907
Organism: Caenorhabditis elegans
Length: 465 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26907.

Description E-value Query
Range
Subject
Range
CDS1 - CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1
427.0 [0..15] [465..14]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQPPAENA DVRQRRAPES PVTERLRAPA RDDARPTSDE SDMEGILQDE DSDAGSKNKE  60
   61 EKLERLTQAI PQDKGSLGVF ADSMLEA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPPRWRNWVV RGLFSIIMIS TFTFIVTRGA TWLMFLVFLI QFKCFQEIIS IGLAVYRLYD  60
   61 FPWFRALSWY FLLTSNYFFF GESLIDYWGI VLKKDNFLHF LVAYHRLVSF ALYCIGFVSF 120
  121 VLSLRKGYYM RQFSLFAWTH LTLLLIVSQS FFIIQNIFQG LIWFLAPVAM IICCDIMSYM 180
  181 FGFFWGKTPL IKLSPKKTWE GFIGGAFSTV VFGILLSLAL YNRPFFVCPV QHYQTDSSNC 240
  241 TIPLAFQLQD YPVPRPFSFV YKILRKEPII QLCPFVFHSI ALSLFASILG PFGGFFASGF 300
  301 KRAFKIKDFG DVIPGHGGLM DRFDCQLLMG TFVMVYIHSF IRVPDASKLL KQIMTLEPQD 360
  361 QLNIFNLLQS ELSKTGLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.045757
Match: 2ns1A
Description: No description for 2ns1A was found.

Predicted functions:

Term Confidence Notes
ammonium transmembrane transporter activity 3.25378130357911 bayes_pls_golite062009
organic cation transmembrane transporter activity 3.21414935217652 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.96907885979651 bayes_pls_golite062009
cation transmembrane transporter activity 1.88135446829074 bayes_pls_golite062009
ion transmembrane transporter activity 1.76810341517807 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.49439394266093 bayes_pls_golite062009
transporter activity 1.48595016516156 bayes_pls_golite062009
transmembrane transporter activity 1.4714803926748 bayes_pls_golite062009
substrate-specific transporter activity 1.3699174299697 bayes_pls_golite062009
methylammonium transmembrane transporter activity 0.930003698282159 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle