| Protein: | nhr-11 |
| Organism: | Caenorhabditis elegans |
| Length: | 459 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-11.
| Description | E-value | Query Range |
Subject Range |
|
|
276.0 | [0..3] | [458..152] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MGPLCAVCES PTAFTLHFGG RCCKACAAFF RRTIALDLKY ECAADDPCEI HFKFPGMRLV 60
61 CRECRLRKCY SAGMRSELVR SKRENFACTR RKDSRNNSDA APNSNSPSTR QSSSPEEMDD 120
121 WSFQMFEEKP KIEDLPLTPS ISHPPLPTQL MPEES
|
| Detection Method: |  |
| Confidence: | 16.30103 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| binding | 0.270879137859077 | bayes_pls_golite062009 |
|
Region A: Residues: [156-459] |
1 11 21 31 41 51
| | | | | |
1 SRTSSFDGGY CSSYPSSSAA THPSPPGMLY SIENNSILQY YHSMETGLCS KRRIMYTNTG 60
61 MDFILDTHAN LQCPFTVNDL RPHDYRNFRG MLRHDFVMLF DYATRFPEFN SFTSHEKNMF 120
121 YRQIVAVDFI LSSAYYTAKL GQAHRQMVLT NGEYLNMDPL PMSGNEIDAR RYFDCDEDFS 180
181 KYRALMPMHI AIWEESIVPF SKLNVTFEEF CLLKALTVWQ ATYFKLTENG REKCRRQRNI 240
241 IIGFLSKMCH SPGGGGEHRV GELLMSMNYL RESAQKLTTS YVMLTVFNVL NCDSMLHEML 300
301 NFQY
|
| Detection Method: | |
| Confidence: | 55.69897 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
