| Protein: | rnf-113 |
| Organism: | Caenorhabditis elegans |
| Length: | 384 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rnf-113.
| Description | E-value | Query Range |
Subject Range |
|
|
249.0 | [0..3] | [320..18] |
|
Region A: Residues: [1-213] |
1 11 21 31 41 51
| | | | | |
1 MDLFRKPKKR NAPVVRKKES SSDEDQDSEV KDVIQKRRRT NPMVQSTKQL DASTRRADNS 60
61 SDDSDDSDDN QDIAVATHSF AASGDAGPSG PRDQGATATL EVDTDYSHDA QAQFERVQQQ 120
121 LKEGVEKDGK ILYKGSALYG AKEAKDTAKG NAASGYNRVG PVRAPQFLRQ TVRWDFAPDI 180
181 CKDYKETGFC TFGDSCKFVH DRSDYKHGWE IDE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [214-384] |
1 11 21 31 41 51
| | | | | |
1 EYEAGKYGAE DDANYEIHEG DDTFPEDCFI CGNPFVDPIV TKCKHYFCTG CALKSFQKSS 60
61 KCPICQQNTE NIMNTAKELL TYLKRKKQQQ KQEAEKQEEE KDSDDDEKPH ECDDHHHHDH 120
121 EDEPEEPEND SNVPEAEEKS DEEQEIMMED VEGLEGGEND SESDDDDAEK D
|
| Detection Method: | |
| Confidence: | 19.522879 |
| Match: | 1rmdA |
| Description: | RAG1 DIMERIZATION DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.24900363539031 | bayes_pls_golite062009 |
| protein binding | 0.77927654368839 | bayes_pls_golite062009 |
