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View Structure Prediction Details

Protein: CE26547
Organism: Caenorhabditis elegans
Length: 605 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26547.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
323.0 [0..154] [580..1376]

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Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLRKDGWY INESQTSQLF DDELLPKNGS EIEKVILNED LRNFGEASII NLLKKEDFVF  60
   61 EGPCVLQLLR YRNVSVPRIK EELNQTDPAH SIIRLFFTDG HSSISALLLQ SIPGITSDTP 120
  121 PGTKILILGK VDVEGGFLIL GKKDIRILGG KVDEMIEKW

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 18.346787
Match: PF08585.3
Description: No description for PF08585.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [160-539]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVEKSSVRAG GFKSSVGKGT GAPKWISFGK RGQKGQLEKG FKANSVMPKT QKEGEDADDD  60
   61 FSKNRAEILK DLDSDTAKTF AKPNLAPPPV KAPAPPKERR VPAARPARKG RGRKNSEDGP 120
  121 DVDVGEYANH KPSGPATLFD FIGGGAGAGA SEKAVELLPP QNVQHLTEKM GKLNVKNSEN 180
  181 FKYPGAGGRR DQRPAAARDD NRGPKNSAPQ NQRPAAARDG NRGPKNPGPQ NRAADYFRDR 240
  241 DRQQRPSTGS VGQQPREVSR NFQNSPRSFN QNSNQGHPRG NQKSFQQGAP HQTPRGNQGN 300
  301 FQQQGPPRGT GNYFFQQGPP RGGQFHGGSQ QGPPPPPPSQ HHPRGFQQQA QQNPPPRGNN 360
  361 QGQSYHGAPR GMGNFGHQEP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.522879
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #3
Region A:
Residues: [540-605]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNVQQSHQQQ TGGPQWRVGA QCLATWTDGN LYPATVTELL PNRTAIVRYN EYGNMHTIPV  60
   61 DFLIIP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.56
Match: 2o4xB
Description: No description for 2o4xB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle