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View Structure Prediction Details

Protein: CE26158
Organism: Caenorhabditis elegans
Length: 603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26158.

Description E-value Query
Range
Subject
Range
gi|187036821, gi... - gi|39597499|emb|CAE59729.1| Hypothetical protein CBG03165 [Caenorhabditis briggsae], gi|187036821|em...
gi|157750904 - gi|157750904|ref|XP_001679164.1| Hypothetical protein CBG03165 [Caenorhabditis briggsae AF16]
213.0 [0..32] [603..1]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMLLHHFFL KLSNIVLPNL LLNILYNKKN CKMRLWILGL LWVLIENVIC LEPLRLVERT  60
   61 HLPRRRSVPA RKLNYGFHRD LPSVMDNVIH SPLENKRIYT KDNFYINAIR PKEKEAILYE 120
  121 SMLIDGKGSI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDIDAFFVTA PPARTTLAPK RFGDNELPDF VKVSEGSVKE DEKLVLDRPQ RAPTDLKLVK  60
   61 LPPQPMSTVA PFKHNSPVRR QLVDPLPPLL QPSPVRFPAQ PWQIPPLHPH QSTPNPLTQF 120
  121 FQPIPQHLIP PPNPFFPQQH QTWTPPTLLQ PNPIPPPPQR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [291-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NESSFDPYIP IGVQQPPYQF QQNFQPAQSA DAHRQPMHHH GFARTFGQQP IPLPSQAAID  60
   61 TAFNQAKERE FSVFPPNQVP KKSTPPIDYS VDSVAVVTKD QRPPQQFFRS IPEKTSEQLR 120
  121 NFVKVHPQVM NNLQKPLIYR GKEMVIPKMF NFTTNPTPPP RLPQPPTA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.30103
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [459-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTVPPPPNQ APIVPHQPMY VPLINPNQKL DLCCRKQRIS PLCQNLCNFD TFNDKTLVAA  60
   61 FLTNQCPGPQ LGQAYDCASS KADHSACCER AGILSFQGGK CIPFCRTHVA TPSNVFDYVI 120
  121 CLQVFETIKG CYRDYQFTHP NIYGD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.98
Match: 2fug9
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle