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View Structure Prediction Details

Protein: CE26158
Organism: Caenorhabditis elegans
Length: 603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE26158.

Description E-value Query
Range
Subject
Range
gi|187036821, gi... - gi|39597499|emb|CAE59729.1| Hypothetical protein CBG03165 [Caenorhabditis briggsae], gi|187036821|em...
gi|157750904 - gi|157750904|ref|XP_001679164.1| Hypothetical protein CBG03165 [Caenorhabditis briggsae AF16]
213.0 [0..32] [603..1]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMLLHHFFL KLSNIVLPNL LLNILYNKKN CKMRLWILGL LWVLIENVIC LEPLRLVERT  60
   61 HLPRRRSVPA RKLNYGFHRD LPSVMDNVIH SPLENKRIYT KDNFYINAIR PKEKEAILYE 120
  121 SMLIDGKGSI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDIDAFFVTA PPARTTLAPK RFGDNELPDF VKVSEGSVKE DEKLVLDRPQ RAPTDLKLVK  60
   61 LPPQPMSTVA PFKHNSPVRR QLVDPLPPLL QPSPVRFPAQ PWQIPPLHPH QSTPNPLTQF 120
  121 FQPIPQHLIP PPNPFFPQQH QTWTPPTLLQ PNPIPPPPQR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [291-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NESSFDPYIP IGVQQPPYQF QQNFQPAQSA DAHRQPMHHH GFARTFGQQP IPLPSQAAID  60
   61 TAFNQAKERE FSVFPPNQVP KKSTPPIDYS VDSVAVVTKD QRPPQQFFRS IPEKTSEQLR 120
  121 NFVKVHPQVM NNLQKPLIYR GKEMVIPKMF NFTTNPTPPP RLPQPPTA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.30103
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [459-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTVPPPPNQ APIVPHQPMY VPLINPNQKL DLCCRKQRIS PLCQNLCNFD TFNDKTLVAA  60
   61 FLTNQCPGPQ LGQAYDCASS KADHSACCER AGILSFQGGK CIPFCRTHVA TPSNVFDYVI 120
  121 CLQVFETIKG CYRDYQFTHP NIYGD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.98
Match: 2fug9
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle