| Protein: | obr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 766 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for obr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
575.0 | [0..12] | [766..118] |
|
Region A: Residues: [1-159] |
1 11 21 31 41 51
| | | | | |
1 MPSLSEFLRK RRARQRRLQA VPSNNKKKSN NNNIMSSTSS GKSRRAASLS SINNFEHLAS 60
61 VEKAGWLNKW TNYLKGYRQR WFVLDSNATL SYYRNPSEVG HTCRGSINLQ EARVHTDKTT 120
121 SCIVISGQSQ TFHVKPQNEM DRQQWTNSLE YMRHKAITR
|
| Detection Method: |  |
| Confidence: | 12.522879 |
| Match: | 1u5eA |
| Description: | Crystal Structure of a N-terminal Fragment of SKAP-Hom Containing Both the Helical Dimerization Domain and the PH Domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.42470476396787 | bayes_pls_golite062009 |
| protein binding | 2.1446140694885 | bayes_pls_golite062009 |
| receptor binding | 0.3173431866346 | bayes_pls_golite062009 |
|
Region A: Residues: [160-364] |
1 11 21 31 41 51
| | | | | |
1 AESEEDEDAQ MAKTDSNRSD ALILANRQMS GKLCDLRTAA NMMNKQGDEL MRALNGTVET 60
61 DKNSLAERAD LLKMTTSAVL QAAEEFVELS EQSAKRLNKI VAVEQKEKAL LQEQLEALAK 120
121 QHSSLERAAS KCARGAAPVS VYSDQEDDEF HDAEEDLAMP CSNSNGPPAT AGVHLTPTKR 180
181 HIGAGDPSSS TCSDSGAVVV VGAHK
|
| Detection Method: | |
| Confidence: | 1.25 |
| Match: | 1m1jC |
| Description: | Fibrinogen C-terminal domains; Fibrinogen gamma chain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [365-766] |
1 11 21 31 41 51
| | | | | |
1 GGRQRRTTVP ERPNLPINLW SIMKNCIGKE LSKIPMPVNF SEPISVLQRV TEDLEYANLL 60
61 ETGAKLSTLE QMCYVAAYAA SNYSTTCHRT NKPFNPLLGE TFEFDRMDDL GWRSVTEQVS 120
121 HHPPAAAHHA EGNGWTMYQD FTMTSRFRGK YLSVIPIGFT HVVFPATKSH FSYRKITTTV 180
181 HNIIVGKLWI DNHGDMEITN HETNEKCLLK FVPYSYFSRE QPRKVYGIVR DAEGIPKYVV 240
241 QGTWDKSIDM LKVSSWNGNH EKPKLEVDET SLKRIWTANP LPKNAEKMHN FTKLAIELNE 300
301 PEEGVAPTDS RLRPDQRLME NGEWDEANRK KLEIEEKQRV VRRRREAEKE LAMKKGDKYE 360
361 EYEPTWFVRV QDESNGALIH QFKGGYWEAK EQQNWEKCPD IF
|
| Detection Method: | |
| Confidence: | 59.0 |
| Match: | 1zhtA |
| Description: | Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| sterol binding | 3.12877992228795 | bayes_pls_golite062009 |
| steroid binding | 2.54679035876403 | bayes_pls_golite062009 |
| binding | 1.67154210149282 | bayes_pls_golite062009 |
| lipid binding | 1.46539100663772 | bayes_pls_golite062009 |
| oxysterol binding | 1.1738554488982 | bayes_pls_golite062009 |
| phospholipid binding | 0.0867097353003303 | bayes_pls_golite062009 |
