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View Structure Prediction Details

Protein: CE25935
Organism: Caenorhabditis elegans
Length: 330 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE25935.

Description E-value Query
Range
Subject
Range
gi|39589713, gi|... - gi|39589713|emb|CAE66948.1| Hypothetical protein CBG12340 [Caenorhabditis briggsae], gi|187029476|em...
gi|157746509 - gi|157746509|ref|XP_001668350.1| Hypothetical protein CBG12340 [Caenorhabditis briggsae AF16]
368.0 [0..1] [330..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINLRRFVHT SCRLERGRTA FYNVHQKVTD PAKQDPDYFE KKARELPLDQ NYIDALTKLY  60
   61 YEKIGSERDL GLKAADNLIL EKTEFGLPRI EKSKTRAKYE DLDVLSNAPE SVKKIFSVEM 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATRKELSQEW KQSLIKSVRQ HSLDENSLEM KIAWLTALIR HWSLLVNDIG QETKKKPTWL  60
   61 THRIWLVINE RRKALRILRE RNETAFEKTI AALKIS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 2qalO
Description: No description for 2qalO was found.

Predicted Domain #3
Region A:
Residues: [217-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHVPKQPAHV KTRKAWAEAQ LKLRVENEKE KRLEELHEKY DKEVEEHKRE TQEKRKALNN  60
   61 ELDKLAQEMR QIDVIEGKSF ETVGKYEPAL ISSLTETVIH SNLFYHPPPT MTEK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle